Rev Language Reference


dnFossilizedBirthDeathProcess

Aliases

  • dnFBDP
  • dnEFBDP
  • dnEpisodicFossilizedBirthDeathProcess

Usage

dnFossilizedBirthDeathProcess(RealPos rootAge/originAge, RealPos lambda, RealPos mu, RealPos psi, Probability[] Lambda, Probability[] Mu, Probability rho, RealPos[] timeline, RealPos[] lambdaTimeline, RealPos[] muTimeline, RealPos[] psiTimeline, RealPos[] LambdaTimeline, RealPos[] MuTimeline, RealPos[] rhoTimeline, String condition, Taxon[] taxa)

Arguments

rootAge/originAge : RealPos (pass by const reference)
The start time of the process.
lambda : RealPos (pass by const reference)
The birth rate(s).
mu : RealPos (pass by const reference)
The death rate(s).
psi : RealPos (pass by const reference)
The serial sampling rate(s).
Lambda : Probability[] (pass by const reference)
The episodic birth burst probabilities.
Default : NULL
Mu : Probability[] (pass by const reference)
The episodic death burst (mass extinction) survival probabilities.
Default : NULL
rho : Probability (pass by const reference)
The probability of sampling taxa at sampling events (at present only if input is scalar).
Default : 1
timeline : RealPos[] (pass by const reference)
The rate interval change times of the piecewise constant process.
Default : NULL
lambdaTimeline : RealPos[] (pass by const reference)
The rate interval change times of the speciation rate.
Default : NULL
muTimeline : RealPos[] (pass by const reference)
The rate interval change times of the extinction rate.
Default : NULL
psiTimeline : RealPos[] (pass by const reference)
The rate interval change times of the fossil sampling rate.
Default : NULL
LambdaTimeline : RealPos[] (pass by const reference)
The rate interval change times of the birth burst probabilities.
Default : NULL
MuTimeline : RealPos[] (pass by const reference)
The rate interval change times of the mass extinction survival probabilities.
Default : NULL
rhoTimeline : RealPos[] (pass by const reference)
The rate interval change times of the taxon sampling rate.
Default : NULL
condition : String (pass by value)
The condition of the process.
Default : time
Options : time|survival|sampling
taxa : Taxon[] (pass by const reference)
The taxa used for initialization.

Domain Type