git clone https://github.com/revbayes/revbayes.git revbayes cd revbayes/projects/cmake ./build.sh
For the MPI version:
./build.sh -mpi true
Make sure that you have a C++ compiler installed on your computer. GCC 4.2 (or higher) and Apple LLVM version 6.0 have both been used successfully. If you don’t have a C++ compiler, you should install Xcode.
Make sure that you have CMake installed. One option to install CMake is using homebrew:
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)" brew install cmake
Download RevBayes from our github repository. Clone the repository using git by running the following command in the terminal
git clone https://github.com/revbayes/revbayes.git revbayes
Open a terminal and go to the RevBayes cmake directory:
Now either build the standard version using the following:
or build the MPI version to produce the rb-mpi executeable:
./build.sh -mpi true
You will likely some compiler warning (e.g.
clang: warning: optimization flag '-finline-functions' is not supported). This is normal.
rb: command not found
The problem is that you tried to run RevBayes but your computer doesn’t know where the executable is. The easiest way is to add the directory in which you compiled RevBayes to your system path:
Error cmake not found!
Please double check that CMake is installed. For OS X, go to step 2 above.
Error can't find the libboost_filesystem.dylib library or Library not loaded: libboost_filesystem.dylib
You need to add the boost libraries to your path variable. You may find that you have to export this
DYLD_LIBRARY_PATH every time you open a new terminal window. To get around this, you can add this to your
.bashrc file (which lives in your home directory). To change this, open a new terminal window and you should be in the home directory. If you do not have either of these files, use the text editor
nano to create this file type:
cd ~ touch .bash_profile nano .bash_profile
Then add the following lines, replacing
<your-revbayes-directory> with wherever you put the Revbayes Github repository:
export DYLD_LIBRARY_PATH=<your-revbayes-directory>/boost_1_60_0/stage/lib:$DYLD_LIBRARY_PATH export PATH=<your-revbayes-directory>/projects/cmake:$PATH
Then save the file using ctrl^o and hit return, then exit using ctrl^x. Now quit the Terminal app and reopen it and the boost libraries will forever be in your path.