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Rev Language Reference

Model Objects

AbstractDiscreteTaxonData
AbstractHomologousDiscreteCharacterData
AverageDistanceMatrix
Bool
BranchLengthTree
CharacterHistoryRateModifier
CladogeneticProbabilityMatrix
CladogeneticSpeciationRateMatrix
ContinuousCharacterData
DistanceMatrix
Integer
IntegerPos
MatrixBoolean
MatrixReal
MatrixRealPos
MatrixRealSymmetric
Natural
Probability
RateGenerator
Real
RealPos
RlRegionalFeatureLayer
Simplex
StochasticMatrix
String
TimeTree
Tree
clade
taxon

Distributions

Functions

Moves

Monitors

mnAncestralState
mnCharHistoryNewick
mnCharHistoryNhx
mnCharacterHistorySummary
mnExtNewick
mnFile
mnHomeologPhase
mnJointConditionalAncestralState
mnModel
mnNexus
mnProbability
mnScreen
mnSiteMixtureAllocation
mnStochasticBranchRate
mnStochasticBranchStateTimes
mnStochasticCharacterMap
mnStochasticVariable

Workspace Objects

BootstrapAnalysis
CorrespondenceAnalysis
HillClimber
beca
dfConstant
dfExponential
dfLinear
mcmc
mcmcmc
model
pathSampler
posteriorPredictiveAnalysis
posteriorPredictiveSimulation
powerPosterior
srGelmanRubin
srGeweke
srMaxIteration
srMaxTime
srMinESS
srStationarity
steppingStoneSampler
validationAnalysis

`RateGenerator`

Methods

getTransitionProbabilities(RealPos rate, RealPos startAge, RealPos endAge)

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