fnCovarionRateMatrix
| Q : | RateGenerator[] (pass by const reference) |
| The rate matrix classes | |
| switch_rates : | RateMatrix (pass by const reference) |
| The class-switching rate matrix | |
| clock_rates : | RealPos[] (pass by const reference) |
| The rate multipliers per class | |
| rescaled : | Bool (pass by value) |
| Should the matrix be normalized? | |
| Default : TRUE |