Rev Language Reference


mvAddRemoveTip

Usage

mvAddRemoveTip(TimeTree tree, Bool extant, Bool extinct, Bool sa, RealPos weight, Probability tuneTarget)

Arguments

tree : TimeTree (<stochastic> pass by reference)
The tree on which this moves operates.
extant : Bool (pass by value)
Should we add/remove extant tips?
Default : TRUE
extinct : Bool (pass by value)
Should we add/remove extinct tips?
Default : FALSE
sa : Bool (pass by value)
Should we add/remove extinct tips as sampled ancestors?
Default : FALSE
weight : RealPos (pass by value)
The weight determines the relative frequency with which this move will be attempted. For details, see the description of the 'moveschedule' parameter on the documentation page for 'mcmc()'.
Default : 1
tuneTarget : Probability (pass by value)
The acceptance probability targeted by auto-tuning.
Default : 0.44