Rev Language Reference

fnHKY - The Hasegawa-Kishino-Yano (1985) nucleotide rate matrix

The HKY85 model.

Usage

fnHKY(RealPos kappa, Simplex baseFrequencies)

Arguments

kappa : RealPos (pass by const reference)
The transition-transversion rate ratio.
baseFrequencies : Simplex (pass by const reference)
The stationary frequencies.

Return Type

RateMatrix

Example

kappa ~ dnLognormal(0,1)
pi ~ dnDirichlet( v(1,1,1,1) )
Q := fnHKY(kappa,pi)

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