Rev Language Reference
dnFossilizedBirthDeath
Aliases
- dnFBDP
Usage
dnFossilizedBirthDeath(RealPos rootAge/originAge, RealPos lambda, RealPos mu, RealPos psi, Probability[] Lambda, Probability[] Mu, Probability rho, RealPos[] timeline, RealPos[] lambdaTimeline, RealPos[] muTimeline, RealPos[] psiTimeline, RealPos[] LambdaTimeline, RealPos[] MuTimeline, RealPos[] rhoTimeline, String condition, Taxon[] taxa, TimeTree initialTree)
Arguments
| rootAge/originAge : | RealPos (pass by const reference) |
| The start time of the process. | |
| lambda : | RealPos (pass by const reference) |
| The birth rate(s). | |
| mu : | RealPos (pass by const reference) |
| The death rate(s). | |
| psi : | RealPos (pass by const reference) |
| The serial sampling rate(s). | |
| Lambda : | Probability[] (pass by const reference) |
| The episodic birth burst probabilities. | |
| Default : NULL | |
| Mu : | Probability[] (pass by const reference) |
| The episodic death burst (mass extinction) probabilities. | |
| Default : NULL | |
| rho : | Probability (pass by const reference) |
| The probability of sampling taxa at sampling events (at present only if input is scalar). | |
| timeline : | RealPos[] (pass by const reference) |
| The rate interval change times of the piecewise constant process. | |
| Default : NULL | |
| lambdaTimeline : | RealPos[] (pass by const reference) |
| The rate interval change times of the speciation rate. | |
| Default : NULL | |
| muTimeline : | RealPos[] (pass by const reference) |
| The rate interval change times of the extinction rate. | |
| Default : NULL | |
| psiTimeline : | RealPos[] (pass by const reference) |
| The rate interval change times of the sampling rate. | |
| Default : NULL | |
| LambdaTimeline : | RealPos[] (pass by const reference) |
| Times at which all taxa give birth with some probability. | |
| Default : NULL | |
| MuTimeline : | RealPos[] (pass by const reference) |
| Times at which all taxa die with some probability. | |
| Default : NULL | |
| rhoTimeline : | RealPos[] (pass by const reference) |
| Times at which all taxa are sampled with some probability. There is always additionally a sampling event at the present. | |
| Default : NULL | |
| condition : | String (pass by value) |
| The condition of the process. | |
| Default : time | |
| Options : time|survival|sampling | |
| taxa : | Taxon[] (pass by const reference) |
| The taxa used for initialization. | |
| initialTree : | TimeTree (pass by value) |
| Instead of drawing a tree from the distribution, initialize distribution with this tree. | |
| Default : NULL |
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