RevBayes

dnTimeVaryingStateDependentSpeciationExtinction(RealPos rootAge/originAge, CladogeneticSpeciationRateMatrix speciationRates/lambda/cladoEventMap, RealPos[][] extinctionRates/mu, RealPos[][] psi/phi, RealPos[] epochs, RateGenerator[] Q, RealPos delta, Simplex pi, Probability rho, String condition, RealPos nTimeSlices, Natural minNumLineages, Natural maxNumLineages, Bool pruneExtinctLineages)

rootAge/originAge :	RealPos (pass by const reference)
	The start time of the process.
speciationRates/lambda/cladoEventMap :	CladogeneticSpeciationRateMatrix (pass by const reference)
	The vector of speciation rates (for anagenetic-only models), or the map of speciation rates to cladogenetic event types.
extinctionRates/mu :	RealPos[][] (pass by const reference)
	The vector of extinction rates.
psi/phi :	RealPos[][] (pass by const reference)
	The vector of serial sampling rates.
	Default : NULL
epochs :	RealPos[] (pass by const reference)
	The time intervals when the diversification and transition rates change.
Q :	RateGenerator[] (pass by const reference)
	The rate matrix of jumping between rate categories.
	Default : NULL
delta :	RealPos (pass by const reference)
	The rate-factor of jumping between rate categories.
	Default : 1
pi :	Simplex (pass by const reference)
	State frequencies at the root.
	Default : NULL
rho :	Probability (pass by const reference)
	The taxon sampling probability.
	Default : 1
condition :	String (pass by value)
	The condition of the birth-death process.
	Default : time
	Options : time\|survival
nTimeSlices :	RealPos (pass by value)
	The number of time slices for the numeric ODE.
	Default : 500
minNumLineages :	Natural (pass by value)
	The minimum number of lineages to simulate.
	Default : 0
maxNumLineages :	Natural (pass by value)
	The maximum number of lineages to simulate.
	Default : 500
pruneExtinctLineages :	Bool (pass by value)
	When simulating should extinct lineages be pruned off?
	Default : TRUE

TimeTree

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