Rev Language Reference
convertFastaFileToNaturalNumbers
Usage
convertFastaFileToNaturalNumbers(String fasta file, String[] taxa, String[] alleles, Natural number of individuals, String output file)
Arguments
| fasta file : | String (pass by value) |
| A fasta file: sequence names must all start with one of the taxa names; this how they are assigned to each taxa. E.g., >taxa1plusotherinfo, >taxa1_plusotherinfo or just >taxa1. | |
| taxa : | String[] (pass by value) |
| A string vector listing the the taxa names. | |
| alleles : | String[] (pass by value) |
| A string vector listing the alleles. | |
| number of individuals : | Natural (pass by value) |
| The number of (virtual or effective) individuals. | |
| output file : | String (pass by value) |
| A NaturalNumbers-type file, where each number corresponds to a PoMo state. |
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