Rev Language Reference


dnHBDP

Usage

dnHBDP(RealPos rootAge, Natural rootState, RealPos[] lambda, RealPos[] mu, RealPos delta, Probability rho, String condition, Bool allowSameCategory, Taxon[] taxa)

Arguments

rootAge : RealPos (pass by const reference)
The age of the root.
rootState : Natural (pass by const reference)
The index of the rate category at the root.
lambda : RealPos[] (pass by const reference)
The vector of speciation rates.
mu : RealPos[] (pass by const reference)
The vector of extinction rates.
delta : RealPos (pass by const reference)
The rate of jumping between rate categories.
rho : Probability (pass by const reference)
The taxon sampling probability.
condition : String (pass by value)
The condition of the birth-death process.
Default : survival
Options : time|survival
allowSameCategory : Bool (pass by const reference)
Do we allow shifts into the same category
Default : TRUE
taxa : Taxon[] (pass by value)
The taxon names used for initialization.

Domain Type