Rev Language Reference
dnHBDP
Usage
dnHBDP(RealPos rootAge, Natural rootState, RealPos[] lambda, RealPos[] mu, RealPos delta, Probability rho, String condition, Bool allowSameCategory, Taxon[] taxa)
Arguments
| rootAge : | RealPos (pass by const reference) |
| The age of the root. | |
| rootState : | Natural (pass by const reference) |
| The index of the rate category at the root. | |
| lambda : | RealPos[] (pass by const reference) |
| The vector of speciation rates. | |
| mu : | RealPos[] (pass by const reference) |
| The vector of extinction rates. | |
| delta : | RealPos (pass by const reference) |
| The rate of jumping between rate categories. | |
| rho : | Probability (pass by const reference) |
| The taxon sampling probability. | |
| condition : | String (pass by value) |
| The condition of the birth-death process. | |
| Default : survival | |
| Options : time|survival | |
| allowSameCategory : | Bool (pass by const reference) |
| Do we allow shifts into the same category | |
| Default : TRUE | |
| taxa : | Taxon[] (pass by value) |
| The taxon names used for initialization. |
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