Rev Language Reference


mvRateAgeSubtreeProposal

Usage

mvRateAgeSubtreeProposal(Tree tree, RealPos alpha, Bool tune, RealPos weight, Probability tuneTarget)

Arguments

tree : Tree (pass by const reference)
The tree to which the branch-rates belong.
alpha : RealPos (pass by value)
The scaling factor (strength) of this move.
Default : 1
tune : Bool (pass by value)
Should we tune the scaling factor during burnin?
Default : TRUE
weight : RealPos (pass by value)
The weight determines the relative frequency with which this move will be attempted. For details, see the description of the 'moveschedule' parameter on the documentation page for 'mcmc()'.
Default : 1
tuneTarget : Probability (pass by value)
The acceptance probability targeted by auto-tuning.
Default : 0.44

Methods