Rev Language Reference
treeTrace
Creates a tree trace object from a vector of trees.
Usage
treeTrace(TimeTree[] trees, Probability burnin)
Arguments
| trees : | TimeTree[] (pass by value) |
| Vector of trees. | |
| burnin : | Probability (pass by value) |
| The fraction/number of samples to discard as burnin. | |
| Default : 0.25 |
Return Type
Example
# Read in a vector of trees
trees = readTrees("trees.nex")
# Create a tree trace
tree_trace = treeTrace(trees, burnin=0.25)
# Create a distribution of trees from the tree trace
tree ~ dnEmpiricalTree(tree_trace)
# Add an MCMC move
moves[1] = mvEmpiricalTree(tree)
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