Rev Language Reference


dnOutgroupBirthDeath

Aliases

  • dnOutgroupBDP

Usage

dnOutgroupBirthDeath(RealPos lambda, RealPos mu, Probability rhoIngroup, Probability rhoOutgroup, Taxon[] taxaOutgroup, String samplingStrategyOutgroup, String samplingStrategyIngroup, RealPos rootAge, String samplingStrategy, String condition, Taxon[] taxa, Clade[] incompleteClades)

Arguments

lambda : RealPos (pass by const reference)
The constant speciation rate.
mu : RealPos (pass by const reference)
The constant extinction rate.
Default : 0
rhoIngroup : Probability (pass by const reference)
The ingroup sampling probability.
Default : 1
rhoOutgroup : Probability (pass by const reference)
The outgroup sampling probability.
Default : 1
taxaOutgroup : Taxon[] (pass by const reference)
The taxa used for initialization.
samplingStrategyOutgroup : String (pass by value)
The sampling strategy of including outgroup taxa at the present.
Default : uniform
Options : uniform|diversified
samplingStrategyIngroup : String (pass by value)
The sampling strategy of including ingroup taxa at the present.
Default : uniform
Options : uniform|diversified
rootAge : RealPos (pass by const reference)
The time of the process starting at the root, if applicable.
samplingStrategy : String (pass by value)
The sampling strategy of including taxa at the present.
Default : uniform
Options : uniform|diversified
condition : String (pass by value)
The condition of the process.
Default : time
Options : time|survival|nTaxa
taxa : Taxon[] (pass by const reference)
The taxa used for initialization.
incompleteClades : Clade[] (pass by const reference)
Vector of incompletely sampled clades with number of missing species.
Default : NULL

Domain Type