RevBayes

dnPhyloCTMCDollo(Tree tree, RateGenerator Q, RealPos deathRate, Simplex rootFrequencies, RealPos branchRates, RealPos[] siteRates, Natural nSites, String type, Bool normalize, String coding)

tree :	Tree (pass by const reference)
	The tree along which the process evolves.
Q :	RateGenerator (pass by const reference)
	The global or branch-specific rate matrices.
	Default : NULL
deathRate :	RealPos (pass by const reference)
	The Dollo character death rate
	Default : 1
rootFrequencies :	Simplex (pass by const reference)
	The root specific frequencies of the characters, if applicable.
	Default : NULL
branchRates :	RealPos (pass by const reference)
	The global or branch-specific rate multipliers.
	Default : 1
siteRates :	RealPos[] (pass by const reference)
	The rate categories for the sites.
	Default : [ ]
nSites :	Natural (pass by value)
	The number of sites, used for simulation.
	Default : 0
type :	String (pass by value)
	The data type, used for simulation and initialization.
	Default : Standard
	Options : Standard\|Binary\|Restriction
normalize :	Bool (pass by value)
	Should we normalize the Dollo substitution matrices?
	Default : TRUE
coding :	String (pass by value)

	Default : noabsencesites

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