Rev Language Reference
dnEpisodicBirthDeath
Aliases
- dnEBDP
Usage
dnEpisodicBirthDeath(RealPos lambdaRates, RealPos lambdaTimes, RealPos muRates, RealPos muTimes, Probability rho, RealPos rootAge, String samplingStrategy, String condition, Taxon[] taxa, Clade[] incompleteClades, TimeTree initialTree)
Arguments
| lambdaRates : | RealPos (pass by const reference) |
| The piecewise-constant speciation rate. | |
| lambdaTimes : | RealPos (pass by const reference) |
| The speciation rate change times. | |
| Default : [ ] | |
| muRates : | RealPos (pass by const reference) |
| The piecewise-constant extinction rate. | |
| muTimes : | RealPos (pass by const reference) |
| The constant extinction rate change times. | |
| Default : [ ] | |
| rho : | Probability (pass by const reference) |
| The taxon sampling fraction(s). | |
| Default : 1 | |
| rootAge : | RealPos (pass by const reference) |
| The time of the process starting at the root, if applicable. | |
| samplingStrategy : | String (pass by value) |
| The sampling strategy of including taxa at the present. | |
| Default : uniform | |
| Options : uniform|diversified | |
| condition : | String (pass by value) |
| The condition of the process. | |
| Default : time | |
| Options : time|survival|nTaxa | |
| taxa : | Taxon[] (pass by const reference) |
| The taxa used for initialization. | |
| incompleteClades : | Clade[] (pass by const reference) |
| Vector of incompletely sampled clades with number of missing species. | |
| Default : NULL | |
| initialTree : | TimeTree (pass by value) |
| Instead of drawing a tree from the distribution, initialize distribution with this tree. | |
| Default : NULL |
Edit this page