Rev Language Reference
mvHomeologPhase
Usage
mvHomeologPhase(AbstractHomologousDiscreteCharacterData ctmc, String tip1, String tip2, RealPos weight, Probability tuneTarget)
Arguments
| ctmc : | AbstractHomologousDiscreteCharacterData (<stochastic> pass by reference) |
| The PhyloCTMC variable. | |
| tip1 : | String (pass by reference) |
| Tip 1 to switch. | |
| tip2 : | String (pass by reference) |
| Tip 2 to switch. | |
| weight : | RealPos (pass by value) |
| The weight determines the relative frequency with which this move will be attempted. For details, see the description of the 'moveschedule' parameter on the documentation page for 'mcmc()'. | |
| Default : 1 | |
| tuneTarget : | Probability (pass by value) |
| The acceptance probability targeted by auto-tuning. | |
| Default : 0.44 |
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