Rev Language Reference
mvCharacterHistory
Usage
mvCharacterHistory(AbstractHomologousDiscreteCharacterData ctmc, RateGenerator qmap_site, RateGeneratorSequence qmap_seq, Probability lambda, String graph, String proposal, RealPos weight, Probability tuneTarget)
Arguments
| ctmc : | AbstractHomologousDiscreteCharacterData (<stochastic> pass by reference) |
| The PhyloCTMC variable. | |
| qmap_site : | RateGenerator (pass by reference) |
| Per-site rate generator. | |
| Default : NULL | |
| qmap_seq : | RateGeneratorSequence (pass by reference) |
| Per-sequence rate generator. | |
| Default : NULL | |
| lambda : | Probability (pass by value) |
| Tuning probability to propose new site history. | |
| Default : 1 | |
| graph : | String (pass by value) |
| Default : node | |
| Options : node|branch|cladogenetic|cladogenetic2 | |
| proposal : | String (pass by value) |
| Default : rejection | |
| Options : rejection|rejection_shift|uniformization | |
| weight : | RealPos (pass by value) |
| The weight determines the relative frequency with which this move will be attempted. For details, see the description of the 'moveschedule' parameter on the documentation page for 'mcmc()'. | |
| Default : 1 | |
| tuneTarget : | Probability (pass by value) |
| The acceptance probability targeted by auto-tuning. | |
| Default : 0.44 |
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