Rev Language Reference



mvCharacterHistory(AbstractHomologousDiscreteCharacterData ctmc, RateGenerator qmap_site, RateGeneratorSequence qmap_seq, Probability lambda, String graph, String proposal, RealPos weight, Probability tuneTarget)


ctmc : AbstractHomologousDiscreteCharacterData (<stochastic> pass by reference)
The PhyloCTMC variable.
qmap_site : RateGenerator (pass by reference)
Per-site rate generator.
Default : NULL
qmap_seq : RateGeneratorSequence (pass by reference)
Per-sequence rate generator.
Default : NULL
lambda : Probability (pass by value)
Tuning probability to propose new site history.
Default : 1
graph : String (pass by value)
Default : node
Options : node|branch|cladogenetic|cladogenetic2
proposal : String (pass by value)
Default : rejection
Options : rejection|rejection_shift|uniformization
weight : RealPos (pass by value)
The weight how often on average this move will be used per iteration.
Default : 1
tuneTarget : Probability (pass by value)
The acceptance probability targeted by auto-tuning.
Default : 0.44