mnStochasticCharacterMap
ctmc : | AbstractHomologousDiscreteCharacterData (pass by reference) |
The continuous-time Markov process to monitor. | |
Default : NULL | |
cdbdp : | TimeTree (pass by reference) |
The character dependent birth-death process to monitor. | |
Default : NULL | |
glhbdsp : | TimeTree (pass by reference) |
The lineage-heterogeneous birth-death process to monitor. | |
Default : NULL | |
include_simmap : | Bool (pass by value) |
Should we log SIMMAP/phytools compatible newick strings? True by default. | |
Default : TRUE | |
use_simmap_default : | Bool (pass by value) |
Should we use the default SIMMAP/phytools event ordering? True by default. | |
Default : TRUE | |
index : | Natural (pass by value) |
The index of the character to be monitored. | |
Default : 1 | |
append : | Bool (pass by value) |
Should we append or overwrite if the file exists? | |
Default : FALSE | |
filename : | String (pass by value) |
The name of the file for storing the samples. | |
printgen : | IntegerPos (pass by value) |
The number of generations between stored samples. | |
Default : 1 | |
separator : | String (pass by value) |
The separator/delimiter between columns in the file. | |
Default : | |
version : | Bool (pass by value) |
Should we record the software version? | |
Default : FALSE |