Rev Language Reference


mnStochasticCharacterMap

Usage

mnStochasticCharacterMap(AbstractHomologousDiscreteCharacterData ctmc, TimeTree cdbdp, TimeTree glhbdsp, Bool include_simmap, Bool use_simmap_default, Natural index, Bool append, String filename, IntegerPos printgen, String separator, Bool version)

Arguments

ctmc : AbstractHomologousDiscreteCharacterData (pass by reference)
The continuous-time Markov process to monitor.
Default : NULL
cdbdp : TimeTree (pass by reference)
The character dependent birth-death process to monitor.
Default : NULL
glhbdsp : TimeTree (pass by reference)
The lineage-heterogeneous birth-death process to monitor.
Default : NULL
include_simmap : Bool (pass by value)
Should we log SIMMAP/phytools compatible newick strings? True by default.
Default : TRUE
use_simmap_default : Bool (pass by value)
Should we use the default SIMMAP/phytools event ordering? True by default.
Default : TRUE
index : Natural (pass by value)
The index of the character to be monitored.
Default : 1
append : Bool (pass by value)
Should we append or overwrite if the file exists?
Default : FALSE
filename : String (pass by value)
The name of the file for storing the samples.
printgen : IntegerPos (pass by value)
The number of generations between stored samples.
Default : 1
separator : String (pass by value)
The separator/delimiter between columns in the file.
Default :
version : Bool (pass by value)
Should we record the software version?
Default : FALSE

Methods