Rev Language Reference


mnStochasticCharacterMap

Usage

mnStochasticCharacterMap(AbstractHomologousDiscreteCharacterData ctmc, TimeTree cdbdp, String filename, Bool include_simmap, Bool use_simmap_default, Natural printgen, String separator, Bool append, Bool version)

Arguments

ctmc : AbstractHomologousDiscreteCharacterData (pass by reference)
The continuous-time Markov process to monitor.
Default : NULL
cdbdp : TimeTree (pass by reference)
The character dependent birth-death process to monitor.
Default : NULL
filename : String (pass by value)
The file to save sampled character histories.
include_simmap : Bool (pass by value)
Should we log SIMMAP/phytools compatible newick strings? True by default.
Default : TRUE
use_simmap_default : Bool (pass by value)
Should we use the default SIMMAP/phytools event ordering? True by default.
Default : TRUE
printgen : Natural (pass by value)
How frequently (in number of iterations) should we save sampled character histories? 1 by default.
Default : 1
separator : String (pass by value)
The delimiter between variables. by default.
Default :
append : Bool (pass by value)
Should we append to an existing file? False by default.
Default : FALSE
version : Bool (pass by value)
Should we record the software version?
Default : FALSE

Methods