Rev Language Reference



mvIndependentTopology(TimeTree tree, Distribution__Tree proposal, RealPos[] rates, Clade outgroup, RealPos weight, Probability tuneTarget)


tree : TimeTree (<stochastic> pass by reference)
The stochastic time tree variable on which this moves operates.
proposal : Distribution__Tree (pass by value)
The proposal topology distribution.
rates : RealPos[] (pass by reference)
The vector of branch-specific substitution rates.
Default : NULL
outgroup : Clade (pass by value)
Outgroup used to root the proposal topologies.
Default : NA
weight : RealPos (pass by value)
The weight how often on average this move will be used per iteration.
Default : 1
tuneTarget : Probability (pass by value)
The acceptance probability targeted by auto-tuning.
Default : 0.44