Rev Language Reference
mvIndependentTopology
Usage
mvIndependentTopology(TimeTree tree, Distribution__Tree proposal, RealPos[] rates, Clade outgroup, RealPos weight, Probability tuneTarget)
Arguments
| tree : | TimeTree (<stochastic> pass by reference) |
| The stochastic time tree variable on which this moves operates. | |
| proposal : | Distribution__Tree (pass by value) |
| The proposal topology distribution. | |
| rates : | RealPos[] (pass by reference) |
| The vector of branch-specific substitution rates. | |
| Default : NULL | |
| outgroup : | Clade (pass by value) |
| Outgroup used to root the proposal topologies. | |
| Default : NA | |
| weight : | RealPos (pass by value) |
| The weight determines the relative frequency with which this move will be attempted. For details, see the description of the 'moveschedule' parameter on the documentation page for 'mcmc()'. | |
| Default : 1 | |
| tuneTarget : | Probability (pass by value) |
| The acceptance probability targeted by auto-tuning. | |
| Default : 0.44 |
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